Repository revision
1:8acaa11e3b6b

Repository 'gecko'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gecko

Gecko tool metadata
Miscellaneous
Gecko
Ungapped genome comparison
gecko
toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.1.b
1.1.b
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.2
toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.1.b (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.1
gecko
Requirements (dependencies defined in the <requirements> tag set)
name version type
gecko 1.1.b package
Functional tests
name inputs outputs required files
Test-1 query: hyopneumoniae_16S.fasta
db: flocculare_16S.fasta
kmer: 8
minlen: 20
similarity: 50
options|selection_mode: noalignments
name: value
hyopneumoniae_16S.fasta
flocculare_16S.fasta
value
Test-2 query: hyopneumoniae_16S.fasta
db: flocculare_16S.fasta
kmer: 8
minlen: 20
similarity: 50
options|selection_mode: alignments
name: value
name: value
hyopneumoniae_16S.fasta
flocculare_16S.fasta
value
Test-3 query: mycoplasma-232.fasta
db: mycoplasma-7422.fasta
kmer: 16
minlen: 50
similarity: 60
options|selection_mode: alignments
name: value
name: value
mycoplasma-232.fasta
mycoplasma-7422.fasta
value