Repository revision
8:1040a307be0c

Repository 'medaka_variant_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant_pipeline

medaka variant pipeline tool metadata
Miscellaneous
via neural networks
medaka_variant_pipeline
toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant_pipeline/medaka_variant_pipeline/1.0.3+galaxy1
1.0.3+galaxy1
medaka --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant_pipeline/medaka_variant_pipeline/1.0.3+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant_pipeline/medaka_variant_pipeline/1.0.3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant_pipeline/medaka_variant_pipeline/1.0.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant_pipeline/medaka_variant_pipeline/1.0.1+galaxy0
medaka_variant_pipeline
Requirements (dependencies defined in the <requirements> tag set)
name version type
medaka 1.0.3 package
Functional tests
name inputs outputs required files
Test-1 i: alignment.bam
reference_source|ref_file: bwa-mem-mt-genome
reference_source|reference_source_selector: cached
out: ['round_0_hap_mixed_probs_hdf', 'round_0_hap_mixed_unphased_vcf', 'log']
name: value
name: value
name: value
alignment.bam
value