Repository revision
0:269c627ae9f4

Repository 'fasta_regex_finder'
hg clone https://toolshed.g2.bx.psu.edu/repos/mbernt/fasta_regex_finder

fasta_regex_finder tool metadata
Miscellaneous
Search in fasta for regexp match
fasta_regex_finder
toolshed.g2.bx.psu.edu/repos/mbernt/fasta_regex_finder/fasta_regex_finder/0.1.0
0.1.0
python $__tool_directory__/fastaregexfinder.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/mbernt/fasta_regex_finder/fasta_regex_finder/0.1.0 (this tool)
fasta_regex_finder
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 input: TestSeqGroup-G4.fasta
attributes: name
TestSeqGroup-G4.fasta
name
Test-2 regex: ACTG
input: test.fas
attributes: name
test.fas
name
Test-3 regex: ACTG
input: test.fas
settings|matchcase: True
settings|advanced: advanced
attributes: name
test.fas
name
Test-4 regex: ACTG
input: test.fas
settings|advanced: advanced
settings|noreverse: True
attributes: name
test.fas
name
Test-5 regex: ACTG
input: test.fas
settings|advanced: advanced
settings|maxstr: 3
attributes: name
test.fas
name
Test-6 input: TestSeqGroup-G4.fasta
settings|seqnames: HJ24-Shp2_oncogenicProtein2 HJ24-Shp2_oncogenicProtein
settings|advanced: advanced
attributes: name
TestSeqGroup-G4.fasta
name