| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/mbernt/fasta_regex_finder/fasta_regex_finder/0.1.0 (this tool) |
| fasta_regex_finder |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 3.8 | package |
| Additional information about this tool |
python '$__tool_directory__/fastaregexfinder.py'
--fasta '$input'
--regex '$regex'
#if $settings.advanced == "advanced"
$settings.matchcase
$settings.noreverse
--maxstr $settings.maxstr
#if $settings.seqnames != ""
--seqnames $settings.seqnames
#end if
#end if
--quiet
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: TestSeqGroup-G4.fasta |
name: value |
TestSeqGroup-G4.fasta value |
| Test-2 |
input: test.fas regex: ACTG |
name: value |
test.fas value |
| Test-3 |
input: test.fas regex: ACTG settings|matchcase: True settings|advanced: advanced |
name: value |
test.fas value |
| Test-4 |
input: test.fas regex: ACTG settings|noreverse: True settings|advanced: advanced |
name: value |
test.fas value |
| Test-5 |
input: test.fas regex: ACTG settings|maxstr: 3 settings|advanced: advanced |
name: value |
test.fas value |
| Test-6 |
input: TestSeqGroup-G4.fasta settings|seqnames: HJ24-Shp2_oncogenicProtein2 HJ24-Shp2_oncogenicProtein settings|advanced: advanced |
name: value |
TestSeqGroup-G4.fasta value |