Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.48.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.46.2+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.46.0.4 |
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.4 |
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.3 |
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.2 |
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.1 |
toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.0 |
kallisto_quant |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
kallisto | 0.46.2 | package |
samtools | 1.12 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
reference_transcriptome|reference: mm10_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|collection|forward: mm10_chrM-1.f.fq single_paired|collection|reverse: mm10_chrM-1.r.fq single_paired|collection|collection_selector: datasets single_paired|single_paired_selector: paired |
name: value |
mm10_chrM.fa mm10_chrM-1.f.fq mm10_chrM-1.r.fq value |
Test-2 |
reference_transcriptome|reference: mm10_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|collection|forward: mm10_chrM-1.f.fq single_paired|collection|reverse: mm10_chrM-1.r.fq single_paired|collection|collection_selector: datasets single_paired|single_paired_selector: paired lib_type: --fr-stranded |
name: value |
mm10_chrM.fa mm10_chrM-1.f.fq mm10_chrM-1.r.fq value |
Test-3 |
reference_transcriptome|reference: mm10_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|collection|reads: paired collection single_paired|collection|collection_selector: collection single_paired|single_paired_selector: paired |
name: value |
mm10_chrM.fa mm10_chrM-1.f.fq mm10_chrM-1.r.fq value |
Test-4 |
reference_transcriptome|reference: mm10_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|reads: mm10_chrM-1.f.fq single_paired|single_paired_selector: single |
name: value |
mm10_chrM.fa mm10_chrM-1.f.fq value |
Test-5 |
reference_transcriptome|reference: felCat8_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|collection|forward: felCat8_chrM_F.fq single_paired|collection|reverse: felCat8_chrM_R.fq single_paired|collection|collection_selector: datasets single_paired|single_paired_selector: paired pseudobam: True |
name: value name: value |
felCat8_chrM.fa felCat8_chrM_F.fq felCat8_chrM_R.fq value |
Test-6 |
single_paired|collection|forward: sacCer2_chrM_F.fq.gz single_paired|collection|reverse: sacCer2_chrM_R.fq single_paired|collection|collection_selector: datasets single_paired|single_paired_selector: paired pseudobam: True |
name: value name: value |
sacCer2_chrM_F.fq.gz sacCer2_chrM_R.fq value |
Test-7 |
reference_transcriptome|reference: hg38_transcripts.fa reference_transcriptome|reference_transcriptome_source: history single_paired|collection|forward: hg38_F.fq.gz single_paired|collection|reverse: hg38_R.fq.gz single_paired|collection|collection_selector: datasets single_paired|single_paired_selector: paired fusion: True |
name: value |
hg38_transcripts.fa hg38_F.fq.gz hg38_R.fq.gz value |