| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.6 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.5 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.0.20151222.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.0.20140616.0 |
| macs2_callpeak |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| macs2 | 2.1.1.20160309 | package |
| r-base | 3.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
effective_genome_size_options|gsize: 3300000000 cutoff_options|cutoff_options_selector: qvalue format: BED outputs: ['peaks_tabular', 'bdg', 'html'] control|c_multiple|input_control_file: Control_200K.bed effective_genome_size_options|effective_genome_size_options_selector: user_defined cutoff_options|qvalue: 0.05 treatment|input_treatment_file: ChIP_200K.bed control|c_select: Yes |
attributes: name attributes: name attributes: name attributes: name |
ChIP_200K.bed Control_200K.bed name |
| Test-2 |
effective_genome_size_options|gsize: 3300000000 cutoff_options|cutoff_options_selector: qvalue format: BED outputs: pdf control|c_multiple|input_control_file: Control_200K.bed effective_genome_size_options|effective_genome_size_options_selector: user_defined cutoff_options|qvalue: 0.05 treatment|input_treatment_file: ChIP_200K.bed control|c_select: Yes |
attributes: name |
ChIP_200K.bed Control_200K.bed name |
| Test-3 |
effective_genome_size_options|gsize: 3300000000 format: BAMPE outputs: pdf effective_genome_size_options|effective_genome_size_options_selector: user_defined nomodel_type|nomodel_type_selector: nomodel advanced_options|nolambda: True treatment|input_treatment_file: bwa-mem-test1.bam |
attributes: name |
bwa-mem-test1.bam name |