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Repository revision

Revision: 4:56e104999978

Repository 'macs2'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/macs2

MACS2 bdgbroadcall tool metadata

Miscellaneous

Name: MACS2 bdgbroadcall

Description: Call broad peaks from bedGraph output

Id: macs2_bdgbroadcall

Guid: toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgbroadcall/2.1.0.20151222.0

Version: 2.1.0.20151222.0

Version command string: macs2 --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgbroadcall/2.1.1.20160309.0

toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgbroadcall/2.1.0.20151222.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgbroadcall/2.1.0.20140616.0

macs2_bdgbroadcall

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

macs2

2.1.0.20151222

package

numpy

1.7.1

package

scipy

0.12.0

package

gnu_awk

4.1.0

package

Functional tests

name

inputs

outputs

required files

Test-1

LVL2MAXGAP: 800
LVL1MAXGAP: 30
minlen: 200
cutofflink: 1.0
cutoffpeak: 2.0
infile: callpeak_treatment_part.bdg

outfile: bdgbroadcall_on_callpeak_treatment.tabular

callpeak_treatment_part.bdg
bdgbroadcall_on_callpeak_treatment.tabular