| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.0.20151222.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.0.20140616.0 |
| macs2_callpeak |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| macs2 | 2.1.0.20151222 | package |
| numpy | 1.7.1 | package |
| scipy | 0.12.0 | package |
| R | 3.1.2 | package |
| MACS2_SCRIPT_PATH | not provided | set_environment |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
outputs: ['peaks_tabular', 'bdg'] effective_genome_size_options|gsize: 3300000000 effective_genome_size_options|effective_genome_size_options_selector: user_defined input_treatment_file: ChIP_200K.bed cutoff_options|cutoff_options_selector: qvalue cutoff_options|qvalue: 0.05 input_control_file: Control_200K.bed band_width: 300 |
output_control_lambda: callpeak_control_part.bdg output_treat_pileup: callpeak_treatment_part.bdg output_tabular: callpeak_part.tabular output_summits: callpeak_summits_part.bed |
ChIP_200K.bed Control_200K.bed callpeak_control_part.bdg callpeak_treatment_part.bdg callpeak_part.tabular callpeak_summits_part.bed |
| Test-2 |
outputs: pdf effective_genome_size_options|gsize: 3300000000 effective_genome_size_options|effective_genome_size_options_selector: user_defined input_treatment_file: ChIP_200K.bed cutoff_options|cutoff_options_selector: qvalue cutoff_options|qvalue: 0.05 input_control_file: Control_200K.bed band_width: 300 |
output_plot: magic.pdf |
ChIP_200K.bed Control_200K.bed magic.pdf |