Repository revision
4:56e104999978

Repository 'macs2'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/macs2

MACS2 filterdup tool metadata
Miscellaneous
Remove duplicate reads at the same position
macs2_filterdup
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.1.0.20151222.0
2.1.0.20151222.0
macs2 --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.1.1.20160309.0
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.1.0.20151222.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.1.0.20140616.0
macs2_filterdup
Requirements (dependencies defined in the <requirements> tag set)
name version type
macs2 2.1.0.20151222 package
numpy 1.7.1 package
scipy 0.12.0 package
Functional tests
name inputs outputs required files
Test-1 effective_genome_size_options|gsize: 3300000000
effective_genome_size_options|effective_genome_size_options_selector: user_defined
infile: ChIP_200K_w_dups.bed
keep_dup_options|keep_dup_options_selector: auto
pvalue: 1e-5
outfile: filterdup_on_ChIP_200K_w_dups.bed
ChIP_200K_w_dups.bed
filterdup_on_ChIP_200K_w_dups.bed