| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.2.9.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.2.7.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.1.1.20160309.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.1.1.20160309.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.1.0.20151222.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_filterdup/2.1.0.20140616.0 |
| macs2_filterdup |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| macs2 | 2.2.9.1 | package |
| r-base | 4.3 | package |
| Additional information about this tool |
export PYTHON_EGG_CACHE=`pwd` &&
macs2 filterdup
-i '${ infile }'
-o '${ outfile }'
--format '${ infile.extension.upper() }'
#if $effective_genome_size_options.effective_genome_size_options_selector == "user_defined":
--gsize '${ effective_genome_size_options.gsize }'
#else:
--gsize '${ effective_genome_size_options.effective_genome_size_options_selector }'
#end if
#if $tsize:
--tsize '${ tsize }'
#end if
--pvalue '${ pvalue }'
#if str( $keep_dup_options.keep_dup_options_selector ) == "user":
--keep-dup '${ keep_dup_options.user_keepdup }'
#else
--keep-dup '${ keep_dup_options.keep_dup_options_selector }'
#end if
--buffer-size $buffer_size
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: ChIP_200K_w_dups.bed effective_genome_size_options|gsize: 3300000000 effective_genome_size_options|effective_genome_size_options_selector: user_defined pvalue: 1e-5 keep_dup_options|keep_dup_options_selector: auto |
name: value |
ChIP_200K_w_dups.bed value |