| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_predictd/2.2.9.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_predictd/2.1.0.20140616.0 |
| macs2_predictd |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| macs2 | 2.2.9.1 | package |
| r-base | 4.3 | package |
| Additional information about this tool |
export PYTHON_EGG_CACHE=`pwd` &&
macs2 predictd
-i ${ ' '.join(["'%s'" % $x for $x in $infiles ]) }
#if $tsize:
--tsize '${ tsize }'
#end if
#if $effective_genome_size_options.effective_genome_size_options_selector == "user_defined":
--gsize '${ effective_genome_size_options.gsize }'
#else:
--gsize '${ effective_genome_size_options.effective_genome_size_options_selector }'
#end if
--bw '${ band_width }'
--mfold '${mfold.lower}' '${mfold.upper}'
--d-min $d_min
--buffer-size $buffer_size
## remove the timepoint and strip the output
2>&1 | awk -F: '{print $4}' | awk '{$1=$1}1'
> '${ outfile }'
&&
Rscript predictd
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infiles: ['Control_200K.bed', 'ChIP_200K.bed'] effective_genome_size_options|gsize: 3300000000 effective_genome_size_options|effective_genome_size_options_selector: user_defined tsize: band_width: 300 mfold|lower: 5 mfold|upper: 50 |
name: value name: value |
Control_200K.bed ChIP_200K.bed value |