| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_refinepeak/2.2.9.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_refinepeak/2.2.7.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_refinepeak/2.1.1.20160309.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_refinepeak/2.1.0.20140616.0 |
| macs2_refinepeak |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| macs2 | 2.2.9.1 | package |
| r-base | 4.3 | package |
| Additional information about this tool |
export PYTHON_EGG_CACHE=`pwd` &&
macs2 refinepeak
-b '${ bed_infile }'
-i '${ infile }'
--format '${ infile.extension.upper() }'
--cutoff '${ cutoff }'
--window-size '${ winsize }'
--ofile '${ outfile }'
--buffer-size $buffer_size
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: refinepeak_bam_input.bam bed_infile: refinepeak_bed_input.bed cutoff: 5.0 winsize: 200 |
name: value |
refinepeak_bam_input.bam refinepeak_bed_input.bed value |