Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.1 |
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.0.20151222.0 |
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.0.20140616.0 |
macs2_callpeak |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
macs2 | 2.1.1.20160309 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
cutoff_options|cutoff_options_selector: qvalue outputs: ['peaks_tabular', 'bdg', 'html'] effective_genome_size_options|gsize: 3300000000 effective_genome_size_options|effective_genome_size_options_selector: user_defined input_treatment_file: ChIP_200K.bed cutoff_options|qvalue: 0.05 mfold|upper: 50 input_control_file: Control_200K.bed mfold|lower: 5 band_width: 300 |
output_control_lambda: callpeak_control_part.bdg output_treat_pileup: callpeak_treatment_part.bdg output_tabular: callpeak_part.tabular output_extra_files: None |
ChIP_200K.bed Control_200K.bed callpeak_control_part.bdg callpeak_treatment_part.bdg callpeak_part.tabular |
Test-2 |
cutoff_options|cutoff_options_selector: qvalue outputs: pdf effective_genome_size_options|gsize: 3300000000 effective_genome_size_options|effective_genome_size_options_selector: user_defined input_treatment_file: ChIP_200K.bed cutoff_options|qvalue: 0.05 mfold|upper: 50 input_control_file: Control_200K.bed mfold|lower: 5 band_width: 300 |
output_plot: magic.pdf |
ChIP_200K.bed Control_200K.bed magic.pdf |