Repository revision
7:f5d67c722d67

Repository 'macs2'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/macs2

MACS2 callpeak tool metadata
Miscellaneous
Call peaks from alignment results
macs2_callpeak
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.0
2.1.1.20160309.0
macs2 --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.1
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.0.20151222.0
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.0.20140616.0
macs2_callpeak
Requirements (dependencies defined in the <requirements> tag set)
name version type
macs2 2.1.1.20160309 package
Functional tests
name inputs outputs required files
Test-1 cutoff_options|cutoff_options_selector: qvalue
outputs: ['peaks_tabular', 'bdg', 'html']
effective_genome_size_options|gsize: 3300000000
effective_genome_size_options|effective_genome_size_options_selector: user_defined
input_treatment_file: ChIP_200K.bed
cutoff_options|qvalue: 0.05
mfold|upper: 50
input_control_file: Control_200K.bed
mfold|lower: 5
band_width: 300
output_control_lambda: callpeak_control_part.bdg
output_treat_pileup: callpeak_treatment_part.bdg
output_tabular: callpeak_part.tabular
output_extra_files: None
ChIP_200K.bed
Control_200K.bed
callpeak_control_part.bdg
callpeak_treatment_part.bdg
callpeak_part.tabular
Test-2 cutoff_options|cutoff_options_selector: qvalue
outputs: pdf
effective_genome_size_options|gsize: 3300000000
effective_genome_size_options|effective_genome_size_options_selector: user_defined
input_treatment_file: ChIP_200K.bed
cutoff_options|qvalue: 0.05
mfold|upper: 50
input_control_file: Control_200K.bed
mfold|lower: 5
band_width: 300
output_plot: magic.pdf
ChIP_200K.bed
Control_200K.bed
magic.pdf