| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_parsimony/mothur_parsimony/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_parsimony/mothur_parsimony/1.36.1.0 |
| mothur_parsimony |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$tree' tree.dat &&
ln -s '$group' group.dat &&
ln -s '$count' count.dat &&
ln -s '$name' name.dat &&
echo 'parsimony(
tree=tree.dat,
iters=$iters,
group=group.dat,
#if $groups:
groups=${ str($groups).replace(",","-") },
#end if
#if $name:
name=name.dat,
#end if
#if $count:
count=count.dat,
#end if
processors='\${GALAXY_SLOTS:-8}'
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
tree: treetest.tre group: treetest.groups groups: ['green', 'orange'] name: treetest.names iters: 1000 savelog: True |
name: value name: value name: value |
treetest.tre treetest.groups treetest.names value |