Repository revision
4:c15d96ff8bf4

Repository 'snipfinder'
hg clone https://toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder

Snip Finder tool metadata
Miscellaneous
Snip Finder
A simple naive metagenomics variant caller
snipfinder
toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snipfinder/0.1.0
0.1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snipfinder/0.1.0 (this tool)
snipfinder
Requirements (dependencies defined in the <requirements> tag set)
name version type
snipfinder 0.1 package
Functional tests
name inputs outputs required files
Test-1 sam_type|samse_input: samse.sam
sam_type|mode: single_end
reference: ref.fa
output: samse_result
ref.fa
samse.sam
samse_result
Test-2 sam_type|mode: paired_end
sam_type|sampe_input: sampe.sam
reference: ref.fa
output: sampe_result
ref.fa
sampe.sam
sampe_result