| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/dropletutils_empty_drops/dropletutils_empty_drops/1.0.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/dropletutils_empty_drops/dropletutils_empty_drops/1.0.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/dropletutils_empty_drops/dropletutils_empty_drops/1.0.3+galaxy0 |
| dropletutils_empty_drops |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| dropletutils-scripts | 0.0.5 | package |
| Additional information about this tool |
dropletutils-empty-drops.R --input-object-file "${input}" --output-object-file "${output_rdata}" --output-text-file "${output_txt}" --lower "${lower}" --niters "${niters}" --filter-fdr "${filter_fdr}" --test-ambient "${testambient}" --filter-empty "${filter_empty}"
#if $ignore != ''
--ignore $ignore
#end if
#if $retain != ''
--retain $retain
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: raw_sce.rds lower: 1000 niters: 10000 testambient: False ignore: 500 retain: 200 filter_empty: True |
name: value name: value |
raw_sce.rds value |