Repository revision
7:038e32885fec

Repository 'anndata_inspect'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect

Inspect AnnData tool metadata
Miscellaneous
object
anndata_inspect
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.4+galaxy1
0.7.4+galaxy1
python -c "import anndata as ad;print('anndata version: %s' % ad.__version__); import loompy;print('\nloompy version: %s' % loompy.__version__)"
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.4+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.22.post1+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.22.post1+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.22.post1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.22.post1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.22.post1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.19+galaxy0
anndata_inspect
Requirements (dependencies defined in the <requirements> tag set)
name version type
anndata 0.7.4 package
loompy 2.0.17 package
h5py 2.9.0 package
Additional information about this tool
cat '$script_file' &&
python '$script_file'
    
    
      
None
False
False
Functional tests
name inputs outputs required files
Test-1 input: krumsiek11.h5ad
inspect|info: general
name: value
krumsiek11.h5ad
value
Test-2 input: krumsiek11.h5ad
inspect|info: X
name: value
krumsiek11.h5ad
value
Test-3 input: krumsiek11.h5ad
inspect|info: obs
name: value
krumsiek11.h5ad
value
Test-4 input: krumsiek11.h5ad
inspect|info: var
name: value
krumsiek11.h5ad
value
Test-5 input: krumsiek11.h5ad
inspect|chunk|list: 3,5,8
inspect|chunk|info: specified
inspect|info: chunk_X
name: value
krumsiek11.h5ad
value
Test-6 input: krumsiek11.h5ad
inspect|chunk|replace: True
inspect|chunk|info: random
inspect|info: chunk_X
name: value
krumsiek11.h5ad
value
Test-7 input: pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad
inspect|uns_info: neighbors
inspect|info: uns
name: value
name: value
pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad
value
Test-8 input: tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad
inspect|uns_info: paga
inspect|info: uns
name: value
name: value
tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad
value
Test-9 input: pp.pca.krumsiek11.h5ad
inspect|uns_info: pca
inspect|info: uns
name: value
name: value
pp.pca.krumsiek11.h5ad
value
Test-10 input: tl.rank_genes_groups.krumsiek11.h5ad
inspect|uns_info: rank_genes_groups
inspect|info: uns
name: value
name: value
name: value
name: value
name: value
tl.rank_genes_groups.krumsiek11.h5ad
value
Test-11 input: pp.pca.krumsiek11.h5ad
inspect|obsm_info: X_pca
inspect|info: obsm
name: value
pp.pca.krumsiek11.h5ad
value
Test-12 input: tl.umap.h5ad
inspect|obsm_info: X_umap
inspect|info: obsm
name: value
tl.umap.h5ad
value
Test-13 input: tl.tsne.h5ad
inspect|obsm_info: X_tsne
inspect|info: obsm
name: value
tl.tsne.h5ad
value
Test-14 input: tl.draw_graph.h5ad
inspect|obsm_info: X_draw_graph
inspect|info: obsm
tl.draw_graph.h5ad
Test-15 input: tl.diffmap.h5ad
inspect|obsm_info: X_diffmap
inspect|info: obsm
name: value
tl.diffmap.h5ad
value
Test-16 input: pp.pca.krumsiek11.h5ad
inspect|varm_info: PCs
inspect|info: varm
name: value
pp.pca.krumsiek11.h5ad
value