| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.22.post1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.22.post1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.6.19+galaxy0 |
| anndata_inspect |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| anndata | 0.6.22.post1 | package |
| loompy | 2.0.17 | package |
| h5py | 2.9.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inspect|info: general input: krumsiek11.h5ad |
attributes: name |
krumsiek11.h5ad name |
| Test-2 |
inspect|info: X input: krumsiek11.h5ad |
attributes: name |
krumsiek11.h5ad name |
| Test-3 |
inspect|info: obs input: krumsiek11.h5ad |
attributes: name |
krumsiek11.h5ad name |
| Test-4 |
inspect|info: var input: krumsiek11.h5ad |
attributes: name |
krumsiek11.h5ad name |
| Test-5 |
inspect|info: chunk_X input: krumsiek11.h5ad inspect|chunk|list: 3,5,8 inspect|chunk|info: specified |
attributes: name |
krumsiek11.h5ad name |
| Test-6 |
inspect|info: chunk_X input: krumsiek11.h5ad inspect|chunk|replace: True inspect|chunk|info: random |
attributes: name |
krumsiek11.h5ad name |
| Test-7 |
inspect|info: uns input: pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad inspect|uns_info: neighbors |
attributes: name attributes: name |
pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad name |
| Test-8 |
inspect|info: uns input: tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad inspect|uns_info: paga |
attributes: name attributes: name |
tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad name |
| Test-9 |
inspect|info: uns input: pp.pca.krumsiek11.h5ad inspect|uns_info: pca |
attributes: name attributes: name |
pp.pca.krumsiek11.h5ad name |
| Test-10 |
inspect|info: uns input: tl.rank_genes_groups.krumsiek11.h5ad inspect|uns_info: rank_genes_groups |
attributes: name attributes: name attributes: name attributes: name attributes: name |
tl.rank_genes_groups.krumsiek11.h5ad name |
| Test-11 |
inspect|info: obsm input: pp.pca.krumsiek11.h5ad inspect|obsm_info: X_pca |
attributes: name |
pp.pca.krumsiek11.h5ad name |
| Test-12 |
inspect|info: obsm input: tl.umap.h5ad inspect|obsm_info: X_umap |
attributes: name |
tl.umap.h5ad name |
| Test-13 |
inspect|info: obsm input: tl.tsne.h5ad inspect|obsm_info: X_tsne |
attributes: name |
tl.tsne.h5ad name |
| Test-14 |
inspect|info: obsm input: tl.draw_graph.h5ad inspect|obsm_info: X_draw_graph |
tl.draw_graph.h5ad |
|
| Test-15 |
inspect|info: obsm input: tl.diffmap.h5ad inspect|obsm_info: X_diffmap |
attributes: name |
tl.diffmap.h5ad name |
| Test-16 |
inspect|info: varm input: pp.pca.krumsiek11.h5ad inspect|varm_info: PCs |
attributes: name |
pp.pca.krumsiek11.h5ad name |