Repository revision
2:e38af83df163

Repository 'qualimap_multi_bamqc'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qualimap_multi_bamqc

QualiMap Multi-Sample BamQC tool metadata
Miscellaneous
qualimap_multi_bamqc
toolshed.g2.bx.psu.edu/repos/iuc/qualimap_multi_bamqc/qualimap_multi_bamqc/2.2.2d
2.2.2d
qualimap --help | grep 'QualiMap v.' | cut -d '.' -f 2-
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qualimap_multi_bamqc/qualimap_multi_bamqc/2.2.2d (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/qualimap_multi_bamqc/qualimap_multi_bamqc/2.2.2c
qualimap_multi_bamqc
Requirements (dependencies defined in the <requirements> tag set)
name version type
qualimap 2.2.2d package
Functional tests
name inputs outputs required files
Test-1 input|mode: individual
input|bam_qc_data_1|bam_qc_input: list collection
input|bam_qc_data_0|bam_qc_input: list collection
attributes: name
genome_results_inside_features.txt
coverage_across_reference.txt
coverage_histogram.txt
genome_fraction_coverage.txt
duplication_rate_histogram.txt
mapped_reads_clipping_profile.txt
mapped_reads_gc-content_distribution.txt
mapped_reads_nucleotide_content.txt
mapping_quality_across_reference.txt
mapping_quality_histogram.txt
name