| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/qiime_assign_taxonomy/qiime_assign_taxonomy/1.9.1.0 (this tool) |
| qiime_assign_taxonomy |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime | 1.9.1 | package |
| blast-legacy | 2.2.22 | package |
| vsearch | 2.3.4 | package |
| mothur | 1.36.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
methodcond|uclust_max_accepts: 3 methodcond|assignment_method: uclust methodcond|similarity: 0.9 methodcond|min_consensus_fraction: 0.51 input_fasta_fp: assign_taxonomy/uclust_input_seqs.fasta id_to_taxonomy_condition|source_selector: void |
attributes: name attributes: name |
assign_taxonomy/uclust_input_seqs.fasta name |
| Test-2 |
methodcond|confidence: 0.5 methodcond|assignment_method: mothur id_to_taxonomy_condition|id_to_taxonomy_fp: assign_taxonomy/mothur_id_to_taxonomy.txt methodcond|references|reference_seqs_fp: assign_taxonomy/mothur_ref_seq_set.fna input_fasta_fp: assign_taxonomy/mothur_repr_set_seqs.fasta methodcond|references|source_selector: history id_to_taxonomy_condition|source_selector: history |
attributes: name |
assign_taxonomy/mothur_repr_set_seqs.fasta assign_taxonomy/mothur_id_to_taxonomy.txt assign_taxonomy/mothur_ref_seq_set.fna name |
| Test-3 |
methodcond|assignment_method: blast id_to_taxonomy_condition|id_to_taxonomy_fp: assign_taxonomy/mothur_id_to_taxonomy.txt methodcond|blast_e_value: 0.001 input_fasta_fp: assign_taxonomy/mothur_repr_set_seqs.fasta methodcond|references|source_selector: history id_to_taxonomy_condition|source_selector: history methodcond|references|reference_seqs_fp: assign_taxonomy/mothur_ref_seq_set.fna |
attributes: name attributes: name |
assign_taxonomy/mothur_repr_set_seqs.fasta assign_taxonomy/mothur_id_to_taxonomy.txt assign_taxonomy/mothur_ref_seq_set.fna name |