| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.15.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.10+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.10 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.9 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.4.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.3.1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.3.0 |
| bcftools_cnv |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bcftools | 1.10 | package |
| htslib | 1.10 | package |
| matplotlib | 3.4.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: cnv.vcf |
name: value |
cnv.vcf value |
| Test-2 |
input_file: cnv.vcf plotting|generate_plots: none |
name: value |
cnv.vcf value |
| Test-3 |
input_file: cnv.vcf query_sample: test control_sample: test |
name: value |
cnv.vcf value |
| Test-4 |
input_file: cnv_baf_only.vcf plotting|generate_plots: none sec_hmm|score_usage|compute_on: baf |
name: value |
cnv_baf_only.vcf value |