Repository revision
7:ca44cfeacbe9

Repository 'qiime_filter_alignment'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_alignment

Filter sequence alignment tool metadata
Miscellaneous
by removing highly variable regions (filter_alignment)
qiime_filter_alignment
toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_alignment/qiime_filter_alignment/1.9.1.0
1.9.1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_alignment/qiime_filter_alignment/1.9.1.0 (this tool)
qiime_filter_alignment
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 allowed_gap_frac: 0.999999
threshold: 3.0
remove_outliers: False
input_fasta_file: filter_alignment/alignment.fasta
suppress_lane_mask_filter: False
attributes: name
filter_alignment/alignment.fasta
name
Test-2 allowed_gap_frac: 0.999999
threshold: 3.0
remove_outliers: True
input_fasta_file: filter_alignment/alignment.fasta
suppress_lane_mask_filter: True
attributes: name
filter_alignment/alignment.fasta
name
Test-3 allowed_gap_frac: 0.999999
remove_outliers: False
entropy_threshold: 0.1
input_fasta_file: filter_alignment/alignment.fasta
suppress_lane_mask_filter: False
threshold: 3.0
attributes: name
filter_alignment/alignment.fasta
name