Galaxy |

Stacks2: sstacks tool metadata

Miscellaneous

Name: Stacks2: sstacks

Description: Match samples to the catalog

Id: stacks2_sstacks

Guid: toolshed.g2.bx.psu.edu/repos/iuc/stacks2_sstacks/stacks2_sstacks/2.4+galaxy0

Version: 2.4+galaxy0

Version command string: process_radtags -h |& grep process_radtags | head -n 1 | cut -d" " -f 2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/stacks2_sstacks/stacks2_sstacks/2.4+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/stacks2_sstacks/stacks2_sstacks/2.4+galaxy0 (this tool)

stacks2_sstacks

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

stacks

2.4

package

Functional tests

name

inputs

outputs

required files

Test-1

input_cat: list collection
popmap: denovo_map/popmap_cstacks.tsv
input_stacks: list collection
add_log: True

attributes: name

ustacks/PopA_01.alleles.tsv
ustacks/PopA_01.snps.tsv
ustacks/PopA_01.tags.tsv
ustacks/PopA_02.alleles.tsv
ustacks/PopA_02.snps.tsv
ustacks/PopA_02.tags.tsv
cstacks/catalog.alleles.tsv
cstacks/catalog.snps.tsv
cstacks/catalog.tags.tsv
denovo_map/popmap_cstacks.tsv
name

Test-2

input_cat: list collection
input_stacks: list collection
add_log: True

attributes: name

Test-3

input_stacks: list collection
add_log: True
input_cat: list collection
popmap: denovo_map/popmap_cstacks.tsv
gapped|use_gapped: yes
x: False

attributes: name