Repository revision
14:f817513840a9

Repository 'openms_idmerger'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger

IDMerger tool metadata
Miscellaneous
IDMerger
Merges several protein/peptide identification files into one file.
IDMerger
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.6+galaxy0
2.6+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.8+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.6+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmerger/IDMerger/2.1.0
IDMerger
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.6 package
openms-thirdparty 2.6 package
blast 2.9.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: ['IDMerger_1_input1.idXML', 'IDMerger_1_input2.idXML']
annotate_file_origin: True
pepxml_protxml: False
merge_proteins_add_PSMs: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
IDMerger_1_input1.idXML
IDMerger_1_input2.idXML
value
Test-2 in: ['IDMerger_2_input1.idXML', 'IDMerger_2_input2.idXML']
annotate_file_origin: False
pepxml_protxml: True
merge_proteins_add_PSMs: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
IDMerger_2_input1.idXML
IDMerger_2_input2.idXML
value
Test-3 in: ['IDMerger_1_input1.idXML', 'IDMerger_1_input1_2.idXML']
annotate_file_origin: False
pepxml_protxml: False
merge_proteins_add_PSMs: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
IDMerger_1_input1.idXML
IDMerger_1_input1_2.idXML
value
Test-4 in: ['degenerated_empty.idXML', 'degenerated_empty_2.idXML']
annotate_file_origin: False
pepxml_protxml: False
merge_proteins_add_PSMs: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
degenerated_empty.idXML
degenerated_empty_2.idXML
value
Test-5 in: IDMerger_2_input1.idXML
add_to: IDMerger_5_input1.idXML
annotate_file_origin: False
pepxml_protxml: False
merge_proteins_add_PSMs: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
IDMerger_2_input1.idXML
IDMerger_5_input1.idXML
value
Test-6 in: ['IDRipper_3_input1.idXML', 'IDRipper_3_input2.idXML']
annotate_file_origin: True
pepxml_protxml: False
merge_proteins_add_PSMs: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
IDRipper_3_input1.idXML
IDRipper_3_input2.idXML
value