| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/4.6.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/4.5.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/4.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2 |
| snippy |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| snippy | 4.5.0 | package |
| tar | 1.32 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_source|ref_file: reference.fasta reference_source|reference_source_selector: history fastq_input|fastq_input1: a_1.fastq.gz fastq_input|fastq_input2: a_2.fastq.gz fastq_input|fastq_input_selector: paired adv|mincov: 2 adv|minqual: 60 outputs: ['outgff', 'outsum'] |
name: value name: value |
reference.fasta a_1.fastq.gz a_2.fastq.gz value |
| Test-2 |
reference_source|ref_file: reference.fasta reference_source|reference_source_selector: history fastq_input|fastq_input1: b_1.fastq fastq_input|fastq_input2: b_2.fastq fastq_input|fastq_input_selector: paired adv|mincov: 2 adv|minqual: 60 outputs: ['outgff', 'outsum'] |
name: value name: value |
reference.fasta b_1.fastq b_2.fastq value |
| Test-3 |
reference_source|ref_file: reference.fasta reference_source|reference_source_selector: history fastq_input|fastq_input: paired collection fastq_input|fastq_input_selector: paired_collection adv|mincov: 2 adv|minqual: 60 outputs: ['outgff', 'outsum'] |
name: value name: value |
reference.fasta b_1.fastq b_2.fastq value |
| Test-4 |
reference_source|ref_file: reference.fasta reference_source|reference_source_selector: history fastq_input|fastq_input_single: b_2.fastq fastq_input|fastq_input_selector: single adv|mincov: 2 adv|minqual: 60 outputs: ['outgff', 'outsum'] |
name: value name: value |
reference.fasta b_2.fastq value |
| Test-5 |
reference_source|ref_file: test_id reference_source|reference_source_selector: cached fastq_input|fastq_input_single: b_2.fastq fastq_input|fastq_input_selector: single adv|mincov: 2 adv|minqual: 60 outputs: ['outgff', 'outsum'] |
name: value name: value |
b_2.fastq value |