Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/4.6.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/4.5.0+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/4.5.0 |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/4.4.5+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/4.4.5+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/4.4.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/4.4.3+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/4.3.6 |
toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/3.2 |
snippy_core |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
snippy | 4.5.0 | package |
tar | 1.32 | package |
Additional information about this tool |
#if $reference_source.reference_source_selector == 'history' #if $reference_source.ref_file.is_of_type("fasta") ln -sf '$reference_source.ref_file' 'ref.fna' && #elif $reference_source.ref_file.is_of_type("genbank") ln -sf '$reference_source.ref_file' 'ref.gbk' && #end if #elif $reference_source.reference_source_selector == 'cached' ln -sf '$reference_source.ref_file.fields.path' 'ref.fna' && #end if mkdir 'snippy_dirs' && cd 'snippy_dirs' && #for $indir in $indirs tar -xf '$indir' -C . && #end for cd - && snippy-core #if $reference_source.reference_source_selector == 'history' #if $reference_source.ref_file.is_of_type("fasta") --ref 'ref.fna' #elif $reference_source.ref_file.is_of_type("genbank") --ref 'ref.gbk' #end if #elif $reference_source.reference_source_selector == 'cached' --ref 'ref.fna' #end if snippy_dirs/*
Functional tests |
name | inputs | outputs | required files |
Test-1 |
indirs: ['a.tgz', 'b.tgz', 'c.tgz'] reference_source|ref_file: reference.fasta reference_source|reference_source_selector: history outputs: outtxt |
name: value |
a.tgz b.tgz c.tgz reference.fasta value |
Test-2 |
indirs: ['a.tgz', 'b.tgz', 'c.tgz'] reference_source|ref_file: test_id reference_source|reference_source_selector: cached outputs: outtxt |
name: value |
a.tgz b.tgz c.tgz value |