| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/39.08+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/39.08+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/39.08+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/39.08+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/39.06+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/39.06+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/39.06+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/39.01+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/1.0.0+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/1.0.0+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/1.0.0+galaxy1.0.0 |
| bbtools_bbduk |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bbmap | 39.08 | package |
| samtools | 1.20 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type_cond|read1: 13-1941-6_S4_L001_R1_600000.fastq.gz reference_type_cond|reference: adapters.fa.gz reference_type_cond|reference_type: files outputs_select: outu log_file: True |
name: value name: value |
13-1941-6_S4_L001_R1_600000.fastq.gz adapters.fa.gz value |
| Test-2 |
input_type_cond|read1: 13-1941-6_S4_L001_R1_600000.fastq.gz input_type_cond|read2: 13-1941-6_S4_L001_R2_600000.fastq.gz input_type_cond|input_type: pair reference_type_cond|reference: adapters.fa.gz reference_type_cond|reference_type: files outputs_select: outu output_stats_cond|output_stats_select: dump output_stats_cond|output_stats: yes output_hists_cond|output_hists_select: quhist output_hists_cond|output_hists: yes |
name: value name: value name: value name: value |
13-1941-6_S4_L001_R1_600000.fastq.gz 13-1941-6_S4_L001_R2_600000.fastq.gz adapters.fa.gz value |
| Test-3 |
input_type_cond|reads_collection: paired collection input_type_cond|input_type: paired reference_type_cond|reference: ['adapters', 'artifacts', 'phix', 'lambda', 'pjet', 'mtst', 'kapa'] reference_type_cond|reference_type: keywords outputs_select: outu |
name: value name: value |
13-1941-6_S4_L001_R1_600000.fastq.gz 13-1941-6_S4_L001_R2_600000.fastq.gz value |