Repository revision
37:ff92440d89c4

Repository 'phagepromoter'
hg clone https://toolshed.g2.bx.psu.edu/repos/martasampaio/phagepromoter

PhagePromoter tool metadata
Miscellaneous
Get promoters of phage genomes
get_proms
toolshed.g2.bx.psu.edu/repos/martasampaio/phagepromoter/get_proms/0.1.0
0.1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/martasampaio/phagepromoter/get_proms/0.1.0 (this tool)
get_proms
Requirements (dependencies defined in the <requirements> tag set)
name version type
biopython 1.72 package
scikit-learn 0.21.3 package
numpy not provided package
pandas not provided package
Functional tests
name inputs outputs required files
Test-1 input_type|genome: NC_015264.gb
input_type|genome_format: genbank
both: False
threshold: 0.50
family: Podoviridae
bacteria: Pseudomonas
lifecycle: virulent
adv|model: SVM2400
name: value
name: value
name: value
NC_015264.gb
value