Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/yating-l/rename_tracks/rename_tracks/1.3 (this tool) |
toolshed.g2.bx.psu.edu/repos/yating-l/rename_tracks/rename_tracks/1.2 |
rename_tracks |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
samtools | 1.2 | package |
ucsc_rename_bigwig | 340 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
format_select|input: Augustus.gff3 mapping: name_mapping.csv format_select|format: gff3 |
attributes: name |
Augustus.gff3 name_mapping.csv name |
Test-2 |
format_select|input: TrfBig.bed mapping: name_mapping.csv format_select|format: bed |
attributes: name |
TrfBig.bed name_mapping.csv name |
Test-3 |
format_select|input: StringTie_assembled_transcripts.gtf mapping: name_mapping.csv format_select|format: gtf |
attributes: name |
StringTie_assembled_transcripts.gtf name_mapping.csv name |
Test-4 |
format_select|input: HISAT.bam mapping: name_mapping.csv format_select|format: bam |
attributes: name |
HISAT.bam name_mapping.csv name |
Test-5 |
format_select|reference: renamed_reference.fasta format_select|input: sequence_cov.bigwig mapping: name_mapping.csv format_select|format: bigwig |
attributes: name |
sequence_cov.bigwig renamed_reference.fasta name_mapping.csv name |