Repository revision
1:72ccb2f848a0

Repository 'rename_tracks'
hg clone https://toolshed.g2.bx.psu.edu/repos/yating-l/rename_tracks

rename the tracks tool metadata
Miscellaneous
a Galaxy tool to rename the scaffold names in the custom track files
rename_tracks
toolshed.g2.bx.psu.edu/repos/yating-l/rename_tracks/rename_tracks/1.3
1.3
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yating-l/rename_tracks/rename_tracks/1.3 (this tool)
toolshed.g2.bx.psu.edu/repos/yating-l/rename_tracks/rename_tracks/1.2
rename_tracks
Requirements (dependencies defined in the <requirements> tag set)
name version type
samtools 1.2 package
ucsc_rename_bigwig 340 package
Functional tests
name inputs outputs required files
Test-1 format_select|input: Augustus.gff3
mapping: name_mapping.csv
format_select|format: gff3
attributes: name
Augustus.gff3
name_mapping.csv
name
Test-2 format_select|input: TrfBig.bed
mapping: name_mapping.csv
format_select|format: bed
attributes: name
TrfBig.bed
name_mapping.csv
name
Test-3 format_select|input: StringTie_assembled_transcripts.gtf
mapping: name_mapping.csv
format_select|format: gtf
attributes: name
StringTie_assembled_transcripts.gtf
name_mapping.csv
name
Test-4 format_select|input: HISAT.bam
mapping: name_mapping.csv
format_select|format: bam
attributes: name
HISAT.bam
name_mapping.csv
name
Test-5 format_select|reference: renamed_reference.fasta
format_select|input: sequence_cov.bigwig
mapping: name_mapping.csv
format_select|format: bigwig
attributes: name
sequence_cov.bigwig
renamed_reference.fasta
name_mapping.csv
name