Galaxy |

UniProt tool metadata

Miscellaneous

Name: UniProt

Description: download proteome as XML or fasta

Id: uniprotxml_downloader

Guid: toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.2.0

Version: 2.2.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.3.0

toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.2.0 (this tool)

toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.1.0

toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.0.0

toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/1.0.1

toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/1.0.0

uniprotxml_downloader

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

requests

2.25.1

package

Functional tests

name

inputs

outputs

required files

Test-1

taxid|taxons: 1566990
taxid|input_choice: taxids
format: xml

name: value

value

Test-2

taxid|taxons: Shi470,PeCan4
taxid|input_choice: taxids
format: fasta

name: value

value

Test-3

taxid|taxon_file: Helicobacter_strains.tsv
taxid|column: 1
taxid|input_choice: history
format: fasta

name: value

Helicobacter_strains.tsv
value

Test-4

taxid|taxon_file: Helicobacter_strains_ids.tsv
taxid|column: 2
taxid|input_choice: history
format: fasta

name: value

Helicobacter_strains_ids.tsv
value