| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/imgteam/imagej2_bunwarpj_compose_raw/imagej2_bunwarpj_compose_raw/3.0.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/imgteam/imagej2_bunwarpj_compose_raw/imagej2_bunwarpj_compose_raw/3.0.0 |
| imagej2_bunwarpj_compose_raw |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fiji | 20170530 | package |
| grep | 3.4 | package |
| Additional information about this tool |
#import os
#set output_log = 'output_log.txt'
#set source_sans_ext = $os.path.splitext($os.path.basename($source_image.file_name))[0]
#set source_with_ext = '.'.join([source_sans_ext, $source_image.ext])
ln -s '$source_image.file_name' '$source_with_ext' &&
#set target_sans_ext = $os.path.splitext($os.path.basename($target_image.file_name))[0]
#set target_with_ext = '.'.join([target_sans_ext, $target_image.ext])
ln -s '$target_image.file_name' '$target_with_ext' &&
bunwarpj -compose_raw
'$target_with_ext'
'$source_with_ext'
'$target_raw_transformation'
'$source_raw_transformation'
'$output'
&>'$output_log';
if [[ $? -ne 0 ]]; then
cat '$output_log' >&2;
fi
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
target_image: dotblot.jpg source_image: blobs.gif target_raw_transformation: target_raw_transformation.txt source_raw_transformation: source_raw_transformation.txt |
name: value |
dotblot.jpg blobs.gif target_raw_transformation.txt source_raw_transformation.txt value |