| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3 |
| toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.1 |
| trimmomatic |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| trimmomatic | 0.32 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
operations_0|operation|name: SLIDINGWINDOW paired_end|is_paired_end: no paired_end|fastq_in: Illumina_SG_R1.fastq |
fastq_out: trimmomatic_se_out1.fastq |
Illumina_SG_R1.fastq trimmomatic_se_out1.fastq |
| Test-2 |
paired_end|fastq_r1_in: Illumina_SG_R1.fastq paired_end|fastq_r2_in: Illumina_SG_R2.fastq operations_0|operation|name: SLIDINGWINDOW paired_end|is_paired_end: yes |
fastq_out_r1_paired: trimmomatic_pe_r1_paired_out1.fastq fastq_out_r1_unpaired: trimmomatic_pe_r1_unpaired_out1.fastq fastq_out_r2_paired: trimmomatic_pe_r2_paired_out1.fastq fastq_out_r2_unpaired: trimmomatic_pe_r2_unpaired_out1.fastq |
Illumina_SG_R1.fastq Illumina_SG_R2.fastq trimmomatic_pe_r1_paired_out1.fastq trimmomatic_pe_r1_unpaired_out1.fastq trimmomatic_pe_r2_paired_out1.fastq trimmomatic_pe_r2_unpaired_out1.fastq |
| Test-3 |
operations_0|operation|crop: 10 operations_0|operation|name: CROP paired_end|is_paired_end: no paired_end|fastq_in: Illumina_SG_R1.fastq |
fastq_out: trimmomatic_se_out2.fastq |
Illumina_SG_R1.fastq trimmomatic_se_out2.fastq |