| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_mapping/0.0.11 (this tool) |
| toolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_mapping/0.0.9 |
| toolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_mapping/0.0.8 |
| toolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler/mira_4_0_mapping/0.0.4 |
| mira_4_0_mapping |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| MIRA | 4.0.2 | package |
| samtools | 0.1.19 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
bam_wanted: True maf_wanted: True references: tvc_contigs.fasta strain_setup: default read_group_0|filenames: tvc_mini.fastq job_type: genome job_quality: accurate read_group_0|segments|type: none |
out_fasta: tvc_map_ref_strain.fasta out_bam: empty_file.dat out_maf: header.mira out_log: empty_file.dat |
tvc_contigs.fasta tvc_mini.fastq tvc_map_ref_strain.fasta empty_file.dat header.mira |
| Test-2 |
bam_wanted: False maf_wanted: False references: tvc_contigs.fasta strain_setup: same read_group_0|filenames: tvc_mini.fastq job_type: genome job_quality: accurate read_group_0|segments|type: none |
out_fasta: tvc_map_same_strain.fasta out_log: empty_file.dat |
tvc_contigs.fasta tvc_mini.fastq tvc_map_same_strain.fasta empty_file.dat |