Galaxy |

Repository revision

Revision: 0:89cf0828d89d

Repository 'gprofiler_orth'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_orth

gProfiler Orth tool metadata

Miscellaneous

Name: gProfiler Orth

Description: translates gene identifiers between organisms

Id: gprofiler_orth

Guid: toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_orth/gprofiler_orth/0.1.7+galaxy10

Version: 0.1.7+galaxy10

Version command string: Rscript -e 'library(gprofiler2); packageVersion("gprofiler2")' | sed 's/\[1\] //' | sed 's/.//;s/.$//'

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_orth/gprofiler_orth/0.1.7+galaxy11

toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_orth/gprofiler_orth/0.1.7+galaxy10 (this tool)

gprofiler_orth

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

r-gprofiler2

0.1.7

package

pandoc

2.7.3

package

Functional tests

name

inputs

outputs

required files

Test-1

input: example_query.txt
tool_settings|base_url: http://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11

attributes: name

example_query.txt
name

Test-2

target|organism: hsapiens
filter_na: True
max: 1
tool_settings|base_url: http://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11
input: example_query_2.txt
source|organism: mmusculus
numeric_ns: WIKIGENE_ACC

attributes: name

example_query_2.txt
name