| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/varscan_version_2/varscan/2.4.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/varscan_version_2/varscan/0.1 |
| varscan |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| varscan | 2.4.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
strand_filter: no min_avg_qual: 15 sample_names: min_coverage: 8 cmd: mpileup2cns min_freq_for_hom: 0.75 min_var_freq: 0.01 p_value: 0.99 input: test_in1.pileup min_supporting_reads: 2 |
output: test_out1.vcf |
test_in1.pileup test_out1.vcf |