| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/rnateam/footprint/footprint/1.0.0 (this tool) |
| footprint |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| footprint | 1.0.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fixed_bg: TRUE bam_file: input_ATAC_HEK293_hg19_chr1.bam motif_coords: input_CTCF_motifs_hg19_chr1.bed chrom_sizes: input_hg19.chr1.chrom.size peak_file: input_CTCF_HEK293_chip_hg19_chr1.bed bias_file: input_SeqBias_ATAC.txt background: Seq refGenomeSource|genomeSource: history refGenomeSource|ownFile: input_hg19_chr1.fa no_of_components: 2 factor_name: CTCF |
RESULTS: output.RESULTS PARAM: output.PARAM plot1: output_plot1.png plot2: output_plot2.png |
input_ATAC_HEK293_hg19_chr1.bam input_hg19.chr1.chrom.size input_CTCF_motifs_hg19_chr1.bed input_hg19_chr1.fa input_SeqBias_ATAC.txt input_CTCF_HEK293_chip_hg19_chr1.bed output.RESULTS output.PARAM output_plot1.png output_plot2.png |