| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.15.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.9.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.8.5 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.8.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.8.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.6.6 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.4.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.2.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.2.0.0 |
| trinity_samples_qccheck |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| trinity | 2.15.1 | package |
| Additional information about this tool |
ln -f -s '${matrix}' input.matrix
&&
PtR
--matrix input.matrix
--samples '${samples}'
--CPM --log2 --compare_replicates
&&
PtR
--matrix input.matrix
--samples '${samples}'
--CPM --log2 --sample_cor_matrix
&&
PtR
--matrix input.matrix
--samples '${samples}'
--CPM --log2
--prin_comp 3
&& mkdir out_pdf
&& mv *rep_compare.pdf out_pdf/
&& mv *sample_cor_matrix.pdf out_pdf/
&& mv *principal_components.pdf out_pdf/
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
matrix: count/qcheck/matrix.counts.matrix samples: count/samples.txt |
count/qcheck/matrix.counts.matrix count/samples.txt |