| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/ecology/stoc_trend_indic/stoceps_trend_indic/0.0.2 |
| toolshed.g2.bx.psu.edu/repos/ecology/stoc_trend_indic/stoceps_trend_indic/0.0.1 (this tool) |
| stoceps_trend_indic |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| r-rodbc | 1.3_15 | package |
| r-reshape | 0.8.8 | package |
| r-data.table | 1.12.0 | package |
| r-rgdal | 1.4_3 | package |
| r-lubridate | 1.7.4 | package |
| r-doby | 4.6_2 | package |
| r-arm | 1.10_1 | package |
| r-ggplot2 | 3.1.0 | package |
| r-scales | 1.0.0 | package |
| r-mgcv | 1.8_24 | package |
| r-plyr | 1.8.4 | package |
| r-speedglm | 0.3_2 | package |
| r-lmertest | 3.1_0 | package |
| r-glmmtmb | 0.2.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
settings|compute_ic: False settings|method: gam inputcoord: coordCarreSTOCfaux.tabular settings|advanced: advanced input: data_FrenchBBS_squarre_dataSTOCallSp_France_trend_2001_2017_ALAARV-PARCAE_2001_2018.tabular inputtabSpecies: tabSpecies.csv settings|smooth_plot: True inputspeciesindic: species_indicateur_fonctionnel.tabular |
attributes: name attributes: name attributes: name attributes: name attributes: name |
data_FrenchBBS_squarre_dataSTOCallSp_France_trend_2001_2017_ALAARV-PARCAE_2001_2018.tabular coordCarreSTOCfaux.tabular tabSpecies.csv species_indicateur_fonctionnel.tabular name |
| Test-2 |
settings|compute_ic: True settings|method: glmmtmb inputcoord: coordCarreSTOCfaux.tabular settings|advanced: advanced input: Datafilteredfortrendanalysis.tabular inputtabSpecies: tabSpecies.csv settings|smooth_plot: False inputspeciesindic: species_indicateur_fonctionnel.tabular |
attributes: name attributes: name attributes: name |
Datafilteredfortrendanalysis.tabular coordCarreSTOCfaux.tabular tabSpecies.csv species_indicateur_fonctionnel.tabular name |