Repository revision
0:fb00426402b0

Repository 'sansa_annotate'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/sansa_annotate

sansa annotate tool metadata
Miscellaneous
structural variants
sansa_annotate
toolshed.g2.bx.psu.edu/repos/iuc/sansa_annotate/sansa_annotate/0.0.7+galaxy0
0.0.7+galaxy0
sansa -v | grep "Sansa " | cut -d "v" -f 3
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/sansa_annotate/sansa_annotate/0.0.8+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/sansa_annotate/sansa_annotate/0.0.7+galaxy0 (this tool)
sansa_annotate
Requirements (dependencies defined in the <requirements> tag set)
name version type
sansa 0.0.7 package
Functional tests
name inputs outputs required files
Test-1 input: input.vcf
type_cond|s|db: db.vcf
type_cond|type_sel: s
oo|out: ['anno', 'log', 'query']
name: value
name: value
name: value
input.vcf
db.vcf
value
Test-2 input: input.vcf
type_cond|s|db: db.vcf
type_cond|s|bpoffset: 51
type_cond|s|ratio: 0.79
type_cond|s|strategy: all
type_cond|s|notype: True
type_cond|s|nomatch: True
type_cond|type_sel: s
oo|out: ['anno', 'log', 'query']
name: value
name: value
name: value
input.vcf
db.vcf
value
Test-3 input: input.vcf
type_cond|fg|gtf: db.gtf
type_cond|type_sel: fg
oo|out: ['anno', 'log', 'query']
name: value
name: value
name: value
input.vcf
db.gtf
value
Test-4 input: input.vcf
type_cond|fg|gtf: db.gtf
type_cond|fg|id: gene_id
type_cond|fg|feature: exon
type_cond|fg|distance: 1001
type_cond|type_sel: fg
oo|out: ['anno', 'log', 'query']
name: value
name: value
name: value
input.vcf
db.gtf
value
Test-5 input: input.vcf
type_cond|s|db: db.vcf
type_cond|fg|gtf: db.gtf
type_cond|type_sel: sfg
oo|out: ['anno', 'log', 'query']
name: value
name: value
name: value
input.vcf
db.vcf
db.gtf
value
Test-6 input: input.vcf
type_cond|s|db: db.vcf
type_cond|s|bpoffset: 51
type_cond|s|ratio: 0.79
type_cond|s|strategy: all
type_cond|s|notype: True
type_cond|s|nomatch: True
type_cond|fg|gtf: db.gtf
type_cond|fg|id: gene_id
type_cond|fg|feature: exon
type_cond|fg|distance: 1001
type_cond|type_sel: sfg
oo|out: ['anno', 'log', 'query']
name: value
name: value
name: value
input.vcf
db.vcf
db.gtf
value