Repository revision
12:4ef2f946290d

Repository 'openms_simplesearchengine'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine

SimpleSearchEngine tool metadata
Miscellaneous
Annotates MS/MS spectra using SimpleSearchEngine.
SimpleSearchEngine
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.6+galaxy0
2.6+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.8+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.6+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.1.0
SimpleSearchEngine
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.6 package
openms-thirdparty 2.6 package
blast 2.9.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: SimpleSearchEngine_1.mzML
database: SimpleSearchEngine_1.fasta
Search|enzyme: Trypsin
Search|decoys: False
Search|precursor|mass_tolerance: 5.0
Search|precursor|mass_tolerance_unit: ppm
Search|precursor|min_charge: 2
Search|precursor|max_charge: 5
Search|precursor|isotopes: 0 1
Search|fragment|mass_tolerance: 0.3
Search|fragment|mass_tolerance_unit: Da
Search|modifications|fixed:
Search|modifications|variable: Oxidation (M)
Search|modifications|variable_max_per_peptide: 2
Search|annotate|PSM:
Search|peptide|min_size: 7
Search|peptide|max_size: 40
Search|peptide|missed_cleavages: 1
Search|peptide|motif:
Search|report|top_hits: 1
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
SimpleSearchEngine_1.mzML
SimpleSearchEngine_1.fasta
value