Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.8+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.6+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.3.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.2.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_simplesearchengine/SimpleSearchEngine/2.1.0 |
SimpleSearchEngine |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.6 | package |
openms-thirdparty | 2.6 | package |
blast | 2.9.0 | package |
ctdopts | 1.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in: SimpleSearchEngine_1.mzML database: SimpleSearchEngine_1.fasta Search|enzyme: Trypsin Search|decoys: False Search|precursor|mass_tolerance: 5.0 Search|precursor|mass_tolerance_unit: ppm Search|precursor|min_charge: 2 Search|precursor|max_charge: 5 Search|precursor|isotopes: 0 1 Search|fragment|mass_tolerance: 0.3 Search|fragment|mass_tolerance_unit: Da Search|modifications|fixed: Search|modifications|variable: Oxidation (M) Search|modifications|variable_max_per_peptide: 2 Search|annotate|PSM: Search|peptide|min_size: 7 Search|peptide|max_size: 40 Search|peptide|missed_cleavages: 1 Search|peptide|motif: Search|report|top_hits: 1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
SimpleSearchEngine_1.mzML SimpleSearchEngine_1.fasta value |