| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/imgteam/imagej2_bunwarpj_raw_transform/imagej2_bunwarpj_raw_transform/3.0.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/imgteam/imagej2_bunwarpj_raw_transform/imagej2_bunwarpj_raw_transform/3.0.1 |
| toolshed.g2.bx.psu.edu/repos/imgteam/imagej2_bunwarpj_raw_transform/imagej2_bunwarpj_raw_transform/3.0.0 |
| imagej2_bunwarpj_raw_transform |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fiji | 20170530 | package |
| grep | 3.4 | package |
| Additional information about this tool |
#import os
#set error_log = 'output_log.txt'
touch '$error_log' &&
## ImageJ2 requires file extensions to be valid image data types.
#set source_sans_ext = $os.path.splitext($os.path.basename($source_image.file_name))[0]
#set source_with_ext = '.'.join([source_sans_ext, $source_image.ext])
ln -s '$source_image.file_name' '$source_with_ext' &&
#set target_sans_ext = $os.path.splitext($os.path.basename($target_image.file_name))[0]
#set target_with_ext = '.'.join([target_sans_ext, $target_image.ext])
ln -s '$target_image.file_name' '$target_with_ext' &&
bunwarpj -raw_transform
'$target_with_ext'
'$source_with_ext'
'$raw_transformation'
'$source_out'
&>'$error_log';
if [[ $? -ne 0 ]]; then
cat '$error_log' >&2;
fi
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
target_image: dotblot.jpg source_image: blobs.gif raw_transformation: source_raw_transformation.txt source_out_datatype: png |
name: value |
dotblot.jpg blobs.gif source_raw_transformation.txt value |