Repository revision
11:beeeed9665ea

Repository 'hyphy_conv'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hyphy_conv

HyPhy-Conv tool metadata
Miscellaneous
HyPhy-Conv
translate an in-frame codon alignment to proteins
hyphy_conv
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_conv/hyphy_conv/2.5.47+galaxy0
2.5.47+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_conv/hyphy_conv/2.5.47+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_conv/hyphy_conv/2.5.36+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_conv/hyphy_conv/2.5.31+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_conv/hyphy_conv/2.5.31+galaxy0
hyphy_conv
Requirements (dependencies defined in the <requirements> tag set)
name version type
hyphy 2.5.47 package
Additional information about this tool
cp '$input_file' conv_input.fa &&
        hyphy conv
            '$gencodeid'
            '$deletions'
            conv_input.fa
            aa.nex
        
        ; EC=\$? ; [[ -f errors.* ]] && cat errors.* >&2 ; exit \$EC
    
    
None
False
Functional tests
name inputs outputs required files
Test-1 input_file: conv-in1.fa
deletions: True
name: value
conv-in1.fa
value