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Repository revision

Revision: 29:4c4ec859c31a

Repository 'sklearn_build_pipeline'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline

Pipeline Builder tool metadata

Miscellaneous

Name: Pipeline Builder

Description: an all-in-one platform to build pipeline, single estimator, preprocessor and custom wrappers

Id: sklearn_build_pipeline

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.11.0

Version: 1.0.11.0

Version command string: echo "1.0.11.0"

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.11.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.10.0

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.4

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.3

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.2

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.1

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.7.12

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.7.10

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.0.4

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0

toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/0.9

sklearn_build_pipeline

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

python

3.9

package

galaxy-ml

0.10.0

package

Functional tests

name

inputs

outputs

required files

Test-1

pipeline_component_0|component_selector|pre_processors|options|random_state: 10
pipeline_component_0|component_selector|pre_processors|selected_pre_processor: QuantileTransformer
pipeline_component_0|component_selector|component_type: pre_processor
final_estimator|estimator_selector|selected_module: none

name: value

value

Test-2

pipeline_component_0|component_selector|pre_processors|selected_pre_processor: PowerTransformer
pipeline_component_0|component_selector|component_type: pre_processor
final_estimator|estimator_selector|regressor: RandomForestRegressor01.h5mlm
final_estimator|estimator_selector|transformer: pipeline17
final_estimator|estimator_selector|selected_module: sklearn.compose

name: value

RandomForestRegressor01.h5mlm
pipeline17
value

Test-3

pipeline_component_0|component_selector|pre_processors|selected_pre_processor: RobustScaler
pipeline_component_0|component_selector|component_type: pre_processor
pipeline_component_1|component_selector|fs_algorithm_selector|score_func: f_classif
pipeline_component_1|component_selector|fs_algorithm_selector|selected_algorithm: SelectKBest
pipeline_component_1|component_selector|component_type: feature_selection
final_estimator|estimator_selector|selected_estimator: SVR
final_estimator|estimator_selector|text_params: kernel='linear'
final_estimator|estimator_selector|selected_module: svm

name: value

value

Test-4

pipeline_component_0|component_selector|pre_processors|selected_pre_processor: RobustScaler
pipeline_component_0|component_selector|component_type: pre_processor
final_estimator|estimator_selector|selected_estimator: LassoCV
final_estimator|estimator_selector|selected_module: linear_model

name: value

value

Test-5

pipeline_component_0|component_selector|pre_processors|selected_pre_processor: RobustScaler
pipeline_component_0|component_selector|component_type: pre_processor
final_estimator|estimator_selector|selected_estimator: XGBClassifier
final_estimator|estimator_selector|selected_module: xgboost

name: value

value

Test-6

pipeline_component_0|component_selector|fs_algorithm_selector|model_inputter|estimator_selector|selected_estimator: AdaBoostClassifier
pipeline_component_0|component_selector|fs_algorithm_selector|model_inputter|estimator_selector|selected_module: ensemble
pipeline_component_0|component_selector|fs_algorithm_selector|selected_algorithm: SelectFromModel
pipeline_component_0|component_selector|component_type: feature_selection

name: value

value

Test-7

pipeline_component_0|component_selector|component_type: None
final_estimator|estimator_selector|selected_estimator: RandomForestRegressor
final_estimator|estimator_selector|text_params: n_estimators=100, random_state=42
final_estimator|estimator_selector|selected_module: ensemble

name: value

value

Test-8

pipeline_component_0|component_selector|matrix_decomposition_selector|select_algorithm: PCA
pipeline_component_0|component_selector|component_type: decomposition
final_estimator|estimator_selector|selected_estimator: AdaBoostRegressor
final_estimator|estimator_selector|selected_module: ensemble

name: value

value

Test-9

pipeline_component_0|component_selector|kernel_approximation_selector|text_params: n_components=10, gamma=2.0
pipeline_component_0|component_selector|kernel_approximation_selector|select_algorithm: RBFSampler
pipeline_component_0|component_selector|component_type: kernel_approximation
final_estimator|estimator_selector|selected_estimator: AdaBoostClassifier
final_estimator|estimator_selector|selected_module: ensemble

name: value

value

Test-10

pipeline_component_0|component_selector|FeatureAgglomeration_selector|text_params: n_clusters=3, affinity='euclidean'
pipeline_component_0|component_selector|FeatureAgglomeration_selector|select_algorithm: FeatureAgglomeration
pipeline_component_0|component_selector|component_type: FeatureAgglomeration
final_estimator|estimator_selector|selected_estimator: AdaBoostClassifier
final_estimator|estimator_selector|selected_module: ensemble

name: value

value

Test-11

pipeline_component_0|component_selector|skrebate_selector|text_params: n_features_to_select=3, n_neighbors=100
pipeline_component_0|component_selector|skrebate_selector|select_algorithm: ReliefF
pipeline_component_0|component_selector|component_type: skrebate
final_estimator|estimator_selector|selected_estimator: RandomForestRegressor
final_estimator|estimator_selector|selected_module: ensemble

name: value

value

Test-12

pipeline_component_0|component_selector|imblearn_selector|select_algorithm: under_sampling.EditedNearestNeighbours
pipeline_component_0|component_selector|component_type: imblearn
final_estimator|estimator_selector|selected_estimator: RandomForestClassifier
final_estimator|estimator_selector|selected_module: ensemble

name: value

value

Test-13

pipeline_component_0|component_selector|component_type: None
final_estimator|estimator_selector|selected_estimator: RandomForestRegressor
final_estimator|estimator_selector|text_params: n_estimators=__import__('os').system('ls ~')
final_estimator|estimator_selector|selected_module: ensemble

Test-14

pipeline_component_0|component_selector|fs_algorithm_selector|estimator_selector|selected_estimator: XGBRegressor
pipeline_component_0|component_selector|fs_algorithm_selector|estimator_selector|text_params: random_state=0
pipeline_component_0|component_selector|fs_algorithm_selector|estimator_selector|selected_module: xgboost
pipeline_component_0|component_selector|fs_algorithm_selector|selected_algorithm: RFE
pipeline_component_0|component_selector|component_type: feature_selection
final_estimator|estimator_selector|selected_module: none

name: value

value

Test-15

pipeline_component_0|component_selector|component_type: None
final_estimator|estimator_selector|selected_estimator: RandomForestClassifier
final_estimator|estimator_selector|selected_module: ensemble

name: value

value

Test-16

pipeline_component_0|component_selector|component_type: IRAPS
final_estimator|estimator_selector|selected_module: none

name: value

value

Test-17

pipeline_component_0|component_selector|component_type: None
final_estimator|estimator_selector|clf_or_regr: BinarizeTargetClassifier
final_estimator|estimator_selector|wrapped_estimator: RandomForestClassifier.h5mlm
final_estimator|estimator_selector|selected_module: binarize_target

name: value

RandomForestClassifier.h5mlm
value

Test-18

pipeline_component_0|component_selector|encoder_selection|seq_length: 1000
pipeline_component_0|component_selector|encoder_selection|padding: True
pipeline_component_0|component_selector|encoder_selection|encoder_type: GenomeOneHotEncoder
pipeline_component_0|component_selector|component_type: preprocessors
final_estimator|estimator_selector|c_estimator: keras_model02
final_estimator|estimator_selector|selected_module: custom_estimator

name: value

keras_model02
value