Repository revision
16:840f29aad145

Repository 'sklearn_build_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline

Pipeline Builder tool metadata
Miscellaneous
Pipeline Builder
an all-in-one platform to build pipeline, single estimator, preprocessor and custom wrappers
sklearn_build_pipeline
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.1
1.0.8.1
echo "1.0.8.1"
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.2
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.1 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.7.12
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.7.10
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.0.4
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/0.9
sklearn_build_pipeline
Requirements (dependencies defined in the <requirements> tag set)
name version type
python 3.6 package
Galaxy-ML 0.8.1 package
Functional tests
name inputs outputs required files
Test-1 pipeline_component_0|component_selector|pre_processors|selected_pre_processor: QuantileTransformer
pipeline_component_0|component_selector|pre_processors|options|random_state: 10
pipeline_component_0|component_selector|component_type: pre_processor
final_estimator|estimator_selector|selected_module: none
 attributes: name
 name
Test-2 final_estimator|estimator_selector|transformer: pipeline17
get_params: True
pipeline_component_0|component_selector|pre_processors|selected_pre_processor: PowerTransformer
final_estimator|estimator_selector|regressor: RandomForestRegressor01.zip
pipeline_component_0|component_selector|component_type: pre_processor
final_estimator|estimator_selector|selected_module: sklearn.compose
 attributes: name
 RandomForestRegressor01.zip
pipeline17
name
Test-3 final_estimator|estimator_selector|selected_module: svm
pipeline_component_0|component_selector|pre_processors|selected_pre_processor: RobustScaler
pipeline_component_0|component_selector|component_type: pre_processor
pipeline_component_1|component_selector|fs_algorithm_selector|selected_algorithm: SelectKBest
pipeline_component_1|component_selector|component_type: feature_selection
final_estimator|estimator_selector|selected_estimator: SVR
pipeline_component_1|component_selector|fs_algorithm_selector|score_func: f_classif
final_estimator|estimator_selector|text_params: kernel='linear'
 attributes: name
 name
Test-4 pipeline_component_0|component_selector|pre_processors|selected_pre_processor: RobustScaler
pipeline_component_0|component_selector|component_type: pre_processor
final_estimator|estimator_selector|selected_estimator: LassoCV
final_estimator|estimator_selector|selected_module: linear_model
 attributes: name
 name
Test-5 pipeline_component_0|component_selector|pre_processors|selected_pre_processor: RobustScaler
pipeline_component_0|component_selector|component_type: pre_processor
final_estimator|estimator_selector|selected_estimator: XGBClassifier
final_estimator|estimator_selector|selected_module: xgboost
 attributes: name
 name
Test-6 pipeline_component_0|component_selector|component_type: feature_selection
pipeline_component_0|component_selector|fs_algorithm_selector|model_inputter|estimator_selector|selected_module: ensemble
pipeline_component_0|component_selector|fs_algorithm_selector|selected_algorithm: SelectFromModel
pipeline_component_0|component_selector|fs_algorithm_selector|model_inputter|estimator_selector|selected_estimator: AdaBoostClassifier
 attributes: name
 name
Test-7 final_estimator|estimator_selector|selected_module: ensemble
pipeline_component_0|component_selector|component_type: None
final_estimator|estimator_selector|text_params: n_estimators=100, random_state=42
final_estimator|estimator_selector|selected_estimator: RandomForestRegressor
get_params: True
 attributes: name
attributes: name
 name
Test-8 pipeline_component_0|component_selector|component_type: decomposition
final_estimator|estimator_selector|selected_estimator: AdaBoostRegressor
pipeline_component_0|component_selector|matrix_decomposition_selector|select_algorithm: PCA
final_estimator|estimator_selector|selected_module: ensemble
 attributes: name
 name
Test-9 pipeline_component_0|component_selector|component_type: kernel_approximation
final_estimator|estimator_selector|selected_estimator: AdaBoostClassifier
pipeline_component_0|component_selector|kernel_approximation_selector|text_params: n_components=10, gamma=2.0
pipeline_component_0|component_selector|kernel_approximation_selector|select_algorithm: RBFSampler
final_estimator|estimator_selector|selected_module: ensemble
 attributes: name
 name
Test-10 pipeline_component_0|component_selector|component_type: FeatureAgglomeration
pipeline_component_0|component_selector|FeatureAgglomeration_selector|select_algorithm: FeatureAgglomeration
final_estimator|estimator_selector|selected_estimator: AdaBoostClassifier
pipeline_component_0|component_selector|FeatureAgglomeration_selector|text_params: n_clusters=3, affinity='euclidean'
final_estimator|estimator_selector|selected_module: ensemble
 attributes: name
 name
Test-11 pipeline_component_0|component_selector|skrebate_selector|text_params: n_features_to_select=3, n_neighbors=100
pipeline_component_0|component_selector|skrebate_selector|select_algorithm: ReliefF
pipeline_component_0|component_selector|component_type: skrebate
final_estimator|estimator_selector|selected_estimator: RandomForestRegressor
final_estimator|estimator_selector|selected_module: ensemble
 attributes: name
 name
Test-12 pipeline_component_0|component_selector|component_type: imblearn
final_estimator|estimator_selector|selected_estimator: RandomForestClassifier
pipeline_component_0|component_selector|imblearn_selector|select_algorithm: under_sampling.EditedNearestNeighbours
final_estimator|estimator_selector|selected_module: ensemble
 attributes: name
 name
Test-13 pipeline_component_0|component_selector|component_type: None
final_estimator|estimator_selector|selected_module: ensemble
final_estimator|estimator_selector|selected_estimator: RandomForestRegressor
final_estimator|estimator_selector|text_params: n_estimators=__import__('os').system('ls ~')
Test-14 pipeline_component_0|component_selector|fs_algorithm_selector|estimator_selector|selected_estimator: XGBRegressor
pipeline_component_0|component_selector|fs_algorithm_selector|selected_algorithm: RFE
pipeline_component_0|component_selector|component_type: feature_selection
pipeline_component_0|component_selector|fs_algorithm_selector|estimator_selector|text_params: random_state=0
final_estimator|estimator_selector|selected_module: none
pipeline_component_0|component_selector|fs_algorithm_selector|estimator_selector|selected_module: xgboost
 attributes: name
 name
Test-15 pipeline_component_0|component_selector|component_type: None
final_estimator|estimator_selector|selected_estimator: RandomForestClassifier
final_estimator|estimator_selector|selected_module: ensemble
 attributes: name
 name
Test-16 pipeline_component_0|component_selector|component_type: IRAPS
final_estimator|estimator_selector|selected_module: none
 attributes: name
 name
Test-17 final_estimator|estimator_selector|selected_module: binarize_target
final_estimator|estimator_selector|clf_or_regr: BinarizeTargetClassifier
pipeline_component_0|component_selector|component_type: None
final_estimator|estimator_selector|wrapped_estimator: RandomForestClassifier.zip
 attributes: name
 RandomForestClassifier.zip
name
Test-18 pipeline_component_0|component_selector|encoder_selection|padding: True
pipeline_component_0|component_selector|encoder_selection|seq_length: 1000
pipeline_component_0|component_selector|component_type: preprocessors
final_estimator|estimator_selector|c_estimator: keras_model02
final_estimator|estimator_selector|selected_module: custom_estimator
pipeline_component_0|component_selector|encoder_selection|encoder_type: GenomeOneHotEncoder
 attributes: name
 keras_model02
name