Repository revision
18:1fdb25a8384d

Repository 'trinity_filter_low_expr_transcripts'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts

Filter low expression transcripts tool metadata
Miscellaneous
from a Trinity assembly
trinity_filter_low_expr_transcripts
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.9.1
2.9.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.15.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.9.1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.8.5
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.8.4
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.8.3
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.6.6
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.4.0.0
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.2.0.1
toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.2.0.0
trinity_filter_low_expr_transcripts
Requirements (dependencies defined in the <requirements> tag set)
name version type
trinity 2.9.1 package
Functional tests
name inputs outputs required files
Test-1 assembly: raw/Trinity.fasta
matrix: filtered/counts.matrix
min_expr_any: 25
isoform_filter|isoform_mode: none
name: value
raw/Trinity.fasta
filtered/counts.matrix
value
Test-2 assembly: raw/Trinity.fasta
matrix: count/qcheck/matrix.counts.matrix
isoform_filter|isoform_mode: highest_iso_only
name: value
raw/Trinity.fasta
count/qcheck/matrix.counts.matrix
value
Test-3 assembly: raw/Trinity.fasta
matrix: filtered/counts.matrix
isoform_filter|min_pct_dom_iso: 20
isoform_filter|isoform_mode: min_pct_dom_iso
name: value
raw/Trinity.fasta
filtered/counts.matrix
value