Repository revision
8:2d6671b10919

Repository 'cutadapt'
hg clone https://toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt

Cutadapt tool metadata
Miscellaneous
Cutadapt
Remove adapter sequences from Fastq/Fasta
cutadapt
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.1.a
1.1.a
cutadapt --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.6
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.1.a (this tool)
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/0.9.5.a
cutadapt
Requirements (dependencies defined in the <requirements> tag set)
name version type
cutadapt 1.1 package
Functional tests
name inputs outputs required files
Test-1 output_filtering_options|output_filtering: default
output_params|output_type: default
front_adapters_0|front_adapter_source|front_adapter:
anywhere_adapters_0|anywhere_adapter_source|anywhere_adapter_source_list: user
anywhere_adapters_0|anywhere_adapter_source|anywhere_adapter: TTAGACATATCTCCGTCG
input: cutadapt_small.fastq
adapters_0|adapter_source|adapter_source_list: user
adapters_0|adapter_source|adapter:
read_modification_params|read_modification: none
front_adapters_0|front_adapter_source|front_adapter_source_list: user
output: cutadapt_small.out
cutadapt_small.fastq
cutadapt_small.out