Repository revision
0:305d0cbe0ffd

Repository 'scanpy_find_variable_genes'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes

Scanpy FindVariableGenes tool metadata
Miscellaneous
based on normalised dispersion of expression
scanpy_find_variable_genes
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.3.2+galaxy0
1.3.2+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.2+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.3.2+galaxy0 (this tool)
scanpy_find_variable_genes
Requirements (dependencies defined in the <requirements> tag set)
name version type
scanpy-scripts 0.0.5 package
Functional tests
name inputs outputs required files
Test-1 parameters_0|max: 3
input_format: anndata
input_obj_file: normalise_data.h5
output_format: anndata
n_bin: 20
parameters_1|name: disp
parameters_0|min: 0.0125
parameters_1|max: 1e9
parameters_1|min: 0.5
flavor: seurat
parameters_0|name: mean
attributes: name
normalise_data.h5
name