Repository revision
18:ae467daae2f7

Repository 'scanpy_find_variable_genes'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes

Scanpy FindVariableGenes tool metadata
Miscellaneous
based on normalised dispersion of expression
scanpy_find_variable_genes
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.7.2+galaxy0
1.7.2+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.8.1+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.7.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.6.0+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.3+galaxy10
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.3+galaxy9
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.3+galaxy8
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.3+galaxy6
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.3+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.2+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.3.2+galaxy0
scanpy_find_variable_genes
Requirements (dependencies defined in the <requirements> tag set)
name version type
scanpy-scripts 0.4.0 package
Functional tests
name inputs outputs required files
Test-1 input_obj_file: normalise_data.h5
input_format: anndata
output_format: anndata
flavor: seurat
min_mean: 0.0125
max_mean: 3
min_disp: 0.5
max_disp: 1e9
n_bin: 20
name: value
normalise_data.h5
value