| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.8.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.8.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.6.6 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.4.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.2.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.2.0.0 |
| trinity_run_de_analysis |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| trinity | 2.8.3 | package |
| bioconductor-edger | 3.20.7 | package |
| bioconductor-limma | 3.34.9 | package |
| bioconductor-deseq2 | 1.18.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
samples: count/samples.txt matrix: count/qcheck/matrix.counts.matrix method_choice|method: DESeq2 |
count/qcheck/matrix.counts.matrix count/samples.txt |
|
| Test-2 |
samples: count/samples.txt matrix: count/qcheck/matrix.counts.matrix method_choice|method: edgeR |
count/qcheck/matrix.counts.matrix count/samples.txt |
|
| Test-3 |
samples: count/samples.txt matrix: count/qcheck/matrix.counts.matrix method_choice|method: voom |
count/qcheck/matrix.counts.matrix count/samples.txt |