| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_masstraceextractor/MassTraceExtractor/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_masstraceextractor/MassTraceExtractor/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_masstraceextractor/MassTraceExtractor/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_masstraceextractor/MassTraceExtractor/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_masstraceextractor/MassTraceExtractor/2.1.0 |
| MassTraceExtractor |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: MassTraceExtractor_1_input.mzML out_type: featureXML algorithm|common|noise_threshold_int: 10.0 algorithm|common|chrom_peak_snr: 3.0 algorithm|common|chrom_fwhm: 5.0 algorithm|mtd|mass_error_ppm: 20.0 algorithm|mtd|reestimate_mt_sd: True algorithm|mtd|quant_method: area algorithm|mtd|trace_termination_criterion: outlier algorithm|mtd|trace_termination_outliers: 5 algorithm|mtd|min_sample_rate: 0.5 algorithm|mtd|min_trace_length: 5.0 algorithm|mtd|max_trace_length: -1.0 algorithm|epd|width_filtering: off algorithm|epd|min_fwhm: 3.0 algorithm|epd|max_fwhm: 60.0 algorithm|epd|masstrace_snr_filtering: False algorithm|epd|enabled: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
MassTraceExtractor_1_input.mzML value |
| Test-2 |
in: MassTraceExtractor_1_input.mzML out_type: featureXML algorithm|common|noise_threshold_int: 10.0 algorithm|common|chrom_peak_snr: 3.0 algorithm|common|chrom_fwhm: 5.0 algorithm|mtd|mass_error_ppm: 20.0 algorithm|mtd|reestimate_mt_sd: True algorithm|mtd|quant_method: area algorithm|mtd|trace_termination_criterion: outlier algorithm|mtd|trace_termination_outliers: 5 algorithm|mtd|min_sample_rate: 0.5 algorithm|mtd|min_trace_length: 6.0 algorithm|mtd|max_trace_length: 12.0 algorithm|epd|width_filtering: off algorithm|epd|min_fwhm: 3.0 algorithm|epd|max_fwhm: 60.0 algorithm|epd|masstrace_snr_filtering: False algorithm|epd|enabled: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
MassTraceExtractor_1_input.mzML value |